IL_7RR5_182

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_182 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.1658

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7RR5|1|C2|G|885
7RR5|1|C2|U|886
7RR5|1|C2|A|887
7RR5|1|C2|U|888
*
7RR5|1|C2|A|924
7RR5|1|C2|G|925
7RR5|1|C2|A|926
7RR5|1|C2|C|927

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SB

RPS1A isoform 1

Chain SO

40S ribosomal protein S14-B

Chain Sa

RPS26B isoform 1