3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
UUAG*CAGA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7RR5_225 not in the Motif Atlas
Geometric match to IL_1D4R_003
Geometric discrepancy: 0.3684
The information below is about IL_1D4R_003
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

7RR5|1|C2|U|1687
7RR5|1|C2|U|1688
7RR5|1|C2|A|1689
7RR5|1|C2|G|1690
*
7RR5|1|C2|C|1711
7RR5|1|C2|A|1712
7RR5|1|C2|G|1713
7RR5|1|C2|A|1714

Current chains

Chain C2
18S rRNA

Nearby chains

Chain LW
RPL24A isoform 1
Chain SG
40S ribosomal protein S6

Coloring options:


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