IL_7RR5_225

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UUAG*CAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_225 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.3684

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7RR5|1|C2|U|1687
7RR5|1|C2|U|1688
7RR5|1|C2|A|1689
7RR5|1|C2|G|1690
*
7RR5|1|C2|C|1711
7RR5|1|C2|A|1712
7RR5|1|C2|G|1713
7RR5|1|C2|A|1714

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LW

RPL24A isoform 1

Chain SG

40S ribosomal protein S6