IL_7RR5_238

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

7RR5|1|C1|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_238 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.4565

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.2

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

7RR5|1|C1|G|1234
7RR5|1|C1|U|1235
7RR5|1|C1|G|1236
7RR5|1|C1|G|1237
7RR5|1|C1|C|1238
*
7RR5|1|C1|G|1250
7RR5|1|C1|A|1251
7RR5|1|C1|A|1252
7RR5|1|C1|U|1253
7RR5|1|C1|C|1254

Current chains

Chain C1

25S rRNA

Nearby chains

Chain P2

RPL12A isoform 1