IL_7S0S_014

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUAC*GAGUGAAAGAGUAC

Length

18 nucleotides

Bulged bases

7S0S|1|C|G|591, 7S0S|1|C|A|595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_014 not in the Motif Atlas

Homologous match to IL_4WF9_015

Geometric discrepancy: 0.2011

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

7S0S|1|C|G|569
7S0S|1|C|U|570
7S0S|1|C|A|571
7S0S|1|C|C|572
*
7S0S|1|C|G|583
7S0S|1|C|A|584
7S0S|1|C|G|585
7S0S|1|C|U|586
7S0S|1|C|G|587
7S0S|1|C|A|588
7S0S|1|C|A|589
7S0S|1|C|A|590
7S0S|1|C|G|591
7S0S|1|C|A|592
7S0S|1|C|G|593
7S0S|1|C|U|594
7S0S|1|C|A|595
7S0S|1|C|C|596

Current chains

Chain C

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L22

Chain W

50S ribosomal protein L24