IL_7S0S_030
3D structure
- PDB id
- 7S0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7S0S_030 not in the Motif Atlas
- Geometric match to IL_5J7L_270
- Geometric discrepancy: 0.0852
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7S0S|1|C|G|971
7S0S|1|C|A|972
7S0S|1|C|G|973
7S0S|1|C|G|974
7S0S|1|C|U|975
7S0S|1|C|A|976
7S0S|1|C|G|977
*
7S0S|1|C|C|1030
7S0S|1|C|G|1031
7S0S|1|C|A|1032
7S0S|1|C|A|1033
7S0S|1|C|U|1034
7S0S|1|C|G|1035
7S0S|1|C|C|1036
Current chains
- Chain C
- 23S rRNA
Nearby chains
- Chain O
- 50S ribosomal protein L16
- Chain X
- 50S ribosomal protein L25
- Chain Y
- 50S ribosomal protein L27
- Chain b
- 50S ribosomal protein L30
- Chain i
- 5S ribosomal RNA; 5S rRNA
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