IL_7S0S_034

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CCGAUG*CUGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_034 not in the Motif Atlas

Geometric match to IL_4V88_421

Geometric discrepancy: 0.2897

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7S0S|1|C|C|991
7S0S|1|C|C|992
7S0S|1|C|G|993
7S0S|1|C|A|994
7S0S|1|C|U|995
7S0S|1|C|G|996
*
7S0S|1|C|C|1012
7S0S|1|C|U|1013
7S0S|1|C|G|1014
7S0S|1|C|A|1015
7S0S|1|C|C|1016
7S0S|1|C|G|1017

Current chains

Chain C

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L16

Chain X

50S ribosomal protein L25