IL_7S0S_041

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUAAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

7S0S|1|C|C|1260, 7S0S|1|C|A|1262

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_041 not in the Motif Atlas

Geometric match to IL_4V9F_040

Geometric discrepancy: 0.0816

The information below is about IL_4V9F_040

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

7S0S|1|C|C|1136
7S0S|1|C|U|1137
7S0S|1|C|A|1138
7S0S|1|C|A|1139
7S0S|1|C|G|1140
7S0S|1|C|U|1141
7S0S|1|C|G|1142
*
7S0S|1|C|C|1258
7S0S|1|C|U|1259
7S0S|1|C|C|1260
7S0S|1|C|A|1261
7S0S|1|C|A|1262
7S0S|1|C|G|1263

Current chains

Chain C

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L6

Chain L

50S ribosomal protein L13

Chain g

50S ribosomal protein L36