IL_7S0S_048

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7S0S|1|C|U|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_048 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1298

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7S0S|1|C|C|1322
7S0S|1|C|G|1323
7S0S|1|C|G|1324
7S0S|1|C|U|1325
7S0S|1|C|G|1326
7S0S|1|C|A|1327
7S0S|1|C|A|1328
7S0S|1|C|G|1329
*
7S0S|1|C|U|1349
7S0S|1|C|G|1350
7S0S|1|C|G|1351
7S0S|1|C|A|1352
7S0S|1|C|G|1353

Current chains

Chain C

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L20