IL_7S0S_058

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UCC*GCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_058 not in the Motif Atlas

Geometric match to IL_3GM7_004

Geometric discrepancy: 0.1702

The information below is about IL_3GM7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7S0S|1|C|U|1560
7S0S|1|C|C|1561
7S0S|1|C|C|1562
*
7S0S|1|C|G|1609
7S0S|1|C|C|1610
7S0S|1|C|A|1611

Current chains

Chain C

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L2