IL_7S0S_116

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CCUCU*ACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_116 not in the Motif Atlas

Homologous match to IL_7RQB_104

Geometric discrepancy: 0.0751

The information below is about IL_7RQB_104

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

7S0S|1|C|C|2904
7S0S|1|C|C|2905
7S0S|1|C|U|2906
7S0S|1|C|C|2907
7S0S|1|C|U|2908
*
7S0S|1|C|A|2949
7S0S|1|C|C|2950
7S0S|1|C|G|2951

Current chains

Chain C

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain M

50S ribosomal protein L14

Chain R

50S ribosomal protein L19