IL_7S0S_117

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UAUAC*GAUAG

Length

10 nucleotides

Bulged bases

7S0S|1|C|U|2913, 7S0S|1|C|A|2914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_117 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.2079

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

7S0S|1|C|U|2911
7S0S|1|C|A|2912
7S0S|1|C|U|2913
7S0S|1|C|A|2914
7S0S|1|C|C|2915
*
7S0S|1|C|G|2942
7S0S|1|C|A|2943
7S0S|1|C|U|2944
7S0S|1|C|A|2945
7S0S|1|C|G|2946

Current chains

Chain C

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain P

50S ribosomal protein L17

Chain R

50S ribosomal protein L19