IL_7S0S_119

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAUAAC*GGAAAC

Length

12 nucleotides

Bulged bases

7S0S|1|C|A|2989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_119 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.0718

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7S0S|1|C|G|2961
7S0S|1|C|A|2962
7S0S|1|C|U|2963
7S0S|1|C|A|2964
7S0S|1|C|A|2965
7S0S|1|C|C|2966
*
7S0S|1|C|G|2986
7S0S|1|C|G|2987
7S0S|1|C|A|2988
7S0S|1|C|A|2989
7S0S|1|C|A|2990
7S0S|1|C|C|2991

Current chains

Chain C

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L6

Chain L

50S ribosomal protein L13

Chain g

50S ribosomal protein L36