IL_7S0S_128
3D structure
- PDB id
- 7S0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- CGAUGAUAC*GAAAAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7S0S_128 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.1014
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
7S0S|1|i|C|72
7S0S|1|i|G|73
7S0S|1|i|A|74
7S0S|1|i|U|75
7S0S|1|i|G|76
7S0S|1|i|A|77
7S0S|1|i|U|78
7S0S|1|i|A|79
7S0S|1|i|C|80
*
7S0S|1|i|G|95
7S0S|1|i|A|96
7S0S|1|i|A|97
7S0S|1|i|A|98
7S0S|1|i|A|99
7S0S|1|i|G|100
7S0S|1|i|U|101
7S0S|1|i|A|102
7S0S|1|i|G|103
Current chains
- Chain i
- 5S rRNA
Nearby chains
- Chain C
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- 50S ribosomal protein L16
- Chain X
- 50S ribosomal protein L25
Coloring options: