IL_7S0S_135

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S0S_135 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.051

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

7S0S|1|C|G|1884
7S0S|1|C|G|1885
7S0S|1|C|A|1886
7S0S|1|C|A|1887
7S0S|1|C|C|1888
7S0S|1|C|U|1889
7S0S|1|C|C|1890
7S0S|1|C|G|1891
7S0S|1|C|G|1892
*
7S0S|1|C|C|2214
7S0S|1|C|U|2215
7S0S|1|C|G|2216
7S0S|1|C|U|2217
7S0S|1|C|C|2218

Current chains

Chain C

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain M

50S ribosomal protein L14