IL_7S1H_074

3D structure

PDB id

7S1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1H_074 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0734

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7S1H|1|I|C|239
7S1H|1|I|C|240
7S1H|1|I|A|241
7S1H|1|I|G|242
7S1H|1|I|U|243
7S1H|1|I|A|244
7S1H|1|I|G|245
*
7S1H|1|I|C|253
7S1H|1|I|G|254
7S1H|1|I|A|255
7S1H|1|I|A|256
7S1H|1|I|C|257
7S1H|1|I|G|258

Current chains

Chain I

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L15

Chain l

50S ribosomal protein L35