IL_7S1H_171

3D structure

PDB id

7S1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1H_171 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.0816

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7S1H|1|I|C|2652
7S1H|1|I|U|2653
7S1H|1|I|A|2654
7S1H|1|I|G|2655
7S1H|1|I|U|2656
7S1H|1|I|A|2657
7S1H|1|I|C|2658
*
7S1H|1|I|G|2663
7S1H|1|I|G|2664
7S1H|1|I|A|2665
7S1H|1|I|C|2666
7S1H|1|I|C|2667
7S1H|1|I|G|2668

Current chains

Chain I

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L6