IL_7S1J_026

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

7S1J|1|C|A|532, 7S1J|1|C|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1J_026 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1238

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7S1J|1|C|G|515
7S1J|1|C|U|516
7S1J|1|C|G|517
7S1J|1|C|C|518
7S1J|1|C|C|519
7S1J|1|C|A|520
7S1J|1|C|G|521
*
7S1J|1|C|C|528
7S1J|1|C|G|529
7S1J|1|C|G|530
7S1J|1|C|U|531
7S1J|1|C|A|532
7S1J|1|C|A|533
7S1J|1|C|U|534
7S1J|1|C|A|535
7S1J|1|C|C|536

Current chains

Chain C

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S3

Chain F

30S ribosomal protein S4

Chain t

30S ribosomal protein S12