IL_7S1J_167

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

7S1J|1|I|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S1J_167 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0809

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

7S1J|1|I|C|2636
7S1J|1|I|U|2637
7S1J|1|I|G|2638
7S1J|1|I|A|2639
7S1J|1|I|G|2640
*
7S1J|1|I|C|2774
7S1J|1|I|G|2775
7S1J|1|I|A|2776
7S1J|1|I|G|2777
7S1J|1|I|A|2778
7S1J|1|I|U|2779
7S1J|1|I|G|2780
7S1J|1|I|A|2781
7S1J|1|I|G|2782

Current chains

Chain I

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain R

50S ribosomal protein L13