IL_7S9U_072

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUAGUAC*GGACCGG

Length

15 nucleotides

Bulged bases

7S9U|1|A|G|2684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S9U_072 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.368

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7S9U|1|A|C|2680
7S9U|1|A|U|2681
7S9U|1|A|U|2682
7S9U|1|A|A|2683
7S9U|1|A|G|2684
7S9U|1|A|U|2685
7S9U|1|A|A|2686
7S9U|1|A|C|2687
*
7S9U|1|A|G|2692
7S9U|1|A|G|2693
7S9U|1|A|A|2694
7S9U|1|A|C|2695
7S9U|1|A|C|2696
7S9U|1|A|G|2697
7S9U|1|A|G|2698

Current chains

Chain A

RNA (2436-MER)

Nearby chains