IL_7SA4_068

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7SA4|1|1|A|1801, 7SA4|1|1|C|1816, 7SA4|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SA4_068 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.0576

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7SA4|1|1|U|1798
7SA4|1|1|G|1799
7SA4|1|1|C|1800
7SA4|1|1|A|1801
7SA4|1|1|A|1802
7SA4|1|1|A|1803
7SA4|1|1|C|1804
*
7SA4|1|1|G|1813
7SA4|1|1|G|1814
7SA4|1|1|A|1815
7SA4|1|1|C|1816
7SA4|1|1|G|1817
7SA4|1|1|U|1818
7SA4|1|1|A|1819
7SA4|1|1|U|1820
7SA4|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2