IL_7SA4_084

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GUGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SA4_084 not in the Motif Atlas

Homologous match to IL_3U4M_001

Geometric discrepancy: 0.5876

The information below is about IL_3U4M_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

7SA4|1|1|G|2110
7SA4|1|1|U|2111
7SA4|1|1|G|2112
7SA4|1|1|U|2113
7SA4|1|1|A|2114
7SA4|1|1|G|2115
7SA4|1|1|G|2116
7SA4|1|1|A|2117
7SA4|1|1|U|2118
7SA4|1|1|A|2119
7SA4|1|1|G|2120
7SA4|1|1|G|2121
*
7SA4|1|1|C|2177
7SA4|1|1|C|2178
7SA4|1|1|C|2179

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA