IL_7SA4_172

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

AAGAAG*CCACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SA4_172 not in the Motif Atlas

Homologous match to IL_5J7L_063

Geometric discrepancy: 0.0978

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

7SA4|1|2|A|1430
7SA4|1|2|A|1431
7SA4|1|2|G|1432
7SA4|1|2|A|1433
7SA4|1|2|A|1434
7SA4|1|2|G|1435
*
7SA4|1|2|C|1466
7SA4|1|2|C|1467
7SA4|1|2|A|1468
7SA4|1|2|C|1469
7SA4|1|2|U|1470

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain P

50S ribosomal protein L19

Chain y

30S ribosomal protein S20