IL_7SAE_014

3D structure

PDB id

7SAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR70P Class1 ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAC*GAGUGAAAGAGAUC

Length

18 nucleotides

Bulged bases

7SAE|1|A|G|550, 7SAE|1|A|U|554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SAE_014 not in the Motif Atlas

Homologous match to IL_4WF9_015

Geometric discrepancy: 0.1416

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

7SAE|1|A|G|528
7SAE|1|A|C|529
7SAE|1|A|A|530
7SAE|1|A|C|531
*
7SAE|1|A|G|542
7SAE|1|A|A|543
7SAE|1|A|G|544
7SAE|1|A|U|545
7SAE|1|A|G|546
7SAE|1|A|A|547
7SAE|1|A|A|548
7SAE|1|A|A|549
7SAE|1|A|G|550
7SAE|1|A|A|551
7SAE|1|A|G|552
7SAE|1|A|A|553
7SAE|1|A|U|554
7SAE|1|A|C|555

Current chains

Chain A

RNA (2434-MER)

Nearby chains

Chain S

50S ribosomal protein L22

Chain U

50S ribosomal protein L24