IL_7SAE_067

3D structure

PDB id

7SAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR70P Class1 ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCGAAG*CGAAGUAUA

Length

16 nucleotides

Bulged bases

7SAE|1|A|G|1830, 7SAE|1|A|A|1845, 7SAE|1|A|U|1849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SAE_067 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1199

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7SAE|1|A|U|1827
7SAE|1|A|G|1828
7SAE|1|A|C|1829
7SAE|1|A|G|1830
7SAE|1|A|A|1831
7SAE|1|A|A|1832
7SAE|1|A|G|1833
*
7SAE|1|A|C|1842
7SAE|1|A|G|1843
7SAE|1|A|A|1844
7SAE|1|A|A|1845
7SAE|1|A|G|1846
7SAE|1|A|U|1847
7SAE|1|A|A|1848
7SAE|1|A|U|1849
7SAE|1|A|A|1850

Current chains

Chain A

RNA (2434-MER)

Nearby chains

Chain C

50S ribosomal protein L2