IL_7SSD_018
3D structure
- PDB id
- 7SSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mid translocation intermediate with EF-G bound with GDP (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGAAGG*CUGGAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SSD_018 not in the Motif Atlas
- Geometric match to IL_7A0S_018
- Geometric discrepancy: 0.1505
- The information below is about IL_7A0S_018
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_29495.1
- Basepair signature
- cWW-tSH-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7SSD|1|1|U|703
7SSD|1|1|G|704
7SSD|1|1|A|705
7SSD|1|1|A|706
7SSD|1|1|G|707
7SSD|1|1|G|708
*
7SSD|1|1|C|723
7SSD|1|1|U|724
7SSD|1|1|G|725
7SSD|1|1|G|726
7SSD|1|1|A|727
7SSD|1|1|G|728
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain b
- 50S ribosomal protein L2
Coloring options: