IL_7SSD_028
3D structure
- PDB id
- 7SSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mid translocation intermediate with EF-G bound with GDP (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUUC*GAUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SSD_028 not in the Motif Atlas
- Geometric match to IL_402D_001
- Geometric discrepancy: 0.2504
- The information below is about IL_402D_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_77658.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
7SSD|1|1|U|870
7SSD|1|1|U|871
7SSD|1|1|U|872
7SSD|1|1|C|873
*
7SSD|1|1|G|904
7SSD|1|1|A|905
7SSD|1|1|U|906
7SSD|1|1|G|907
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain 5
- Transfer RNA; tRNA
- Chain m
- 50S ribosomal protein L16
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