IL_7SSD_067

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7SSD|1|1|A|1801, 7SSD|1|1|C|1816, 7SSD|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSD_067 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1201

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7SSD|1|1|U|1798
7SSD|1|1|G|1799
7SSD|1|1|C|1800
7SSD|1|1|A|1801
7SSD|1|1|A|1802
7SSD|1|1|A|1803
7SSD|1|1|C|1804
*
7SSD|1|1|G|1813
7SSD|1|1|G|1814
7SSD|1|1|A|1815
7SSD|1|1|C|1816
7SSD|1|1|G|1817
7SSD|1|1|U|1818
7SSD|1|1|A|1819
7SSD|1|1|U|1820
7SSD|1|1|A|1821

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2