IL_7SSD_097
3D structure
- PDB id
- 7SSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mid translocation intermediate with EF-G bound with GDP (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 7SSD|1|1|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SSD_097 not in the Motif Atlas
- Homologous match to IL_5J7L_345
- Geometric discrepancy: 0.1156
- The information below is about IL_5J7L_345
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
7SSD|1|1|C|2636
7SSD|1|1|U|2637
7SSD|1|1|G|2638
7SSD|1|1|A|2639
7SSD|1|1|G|2640
*
7SSD|1|1|C|2774
7SSD|1|1|G|2775
7SSD|1|1|A|2776
7SSD|1|1|G|2777
7SSD|1|1|A|2778
7SSD|1|1|U|2779
7SSD|1|1|G|2780
7SSD|1|1|A|2781
7SSD|1|1|G|2782
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L13
Coloring options: