IL_7SSD_143

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

7SSD|1|3|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSD_143 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.2049

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

7SSD|1|3|U|684
7SSD|1|3|G|685
7SSD|1|3|U|686
7SSD|1|3|A|687
7SSD|1|3|G|688
*
7SSD|1|3|C|699
7SSD|1|3|G|700
7SSD|1|3|U|701
7SSD|1|3|A|702
7SSD|1|3|G|703
7SSD|1|3|A|704
7SSD|1|3|G|705
7SSD|1|3|A|706

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain P

30S ribosomal protein S11