IL_7SSL_143

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

7SSL|1|3|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSL_143 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1781

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

7SSL|1|3|U|684
7SSL|1|3|G|685
7SSL|1|3|U|686
7SSL|1|3|A|687
7SSL|1|3|G|688
*
7SSL|1|3|C|699
7SSL|1|3|G|700
7SSL|1|3|U|701
7SSL|1|3|A|702
7SSL|1|3|G|703
7SSL|1|3|A|704
7SSL|1|3|G|705
7SSL|1|3|A|706

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain P

30S ribosomal protein S11