IL_7SSL_193

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAA*UGCC

Length

9 nucleotides

Bulged bases

7SSL|1|3|A|130

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSL_193 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.228

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

7SSL|1|3|G|127
7SSL|1|3|G|128
7SSL|1|3|A|129
7SSL|1|3|A|130
7SSL|1|3|A|131
*
7SSL|1|3|U|231
7SSL|1|3|G|232
7SSL|1|3|C|233
7SSL|1|3|C|234

Current chains

Chain 3

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16

Chain V

30S ribosomal protein S17

Chain Y

30S ribosomal protein S20