IL_7SSN_180

3D structure

PDB id

7SSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAACG*CGGG

Length

10 nucleotides

Bulged bases

7SSN|1|1|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSN_180 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3925

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7SSN|1|1|C|1319
7SSN|1|1|C|1320
7SSN|1|1|A|1321
7SSN|1|1|A|1322
7SSN|1|1|C|1323
7SSN|1|1|G|1324
*
7SSN|1|1|C|1330
7SSN|1|1|G|1331
7SSN|1|1|G|1332
7SSN|1|1|G|1333

Current chains

Chain 1

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L22