IL_7SSW_066

3D structure

PDB id

7SSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G dissociated (Structure VI)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAGGU*AUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSW_066 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.2933

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7SSW|1|1|U|1720
7SSW|1|1|G|1721
7SSW|1|1|A|1722
7SSW|1|1|G|1723
7SSW|1|1|G|1724
7SSW|1|1|U|1725
*
7SSW|1|1|A|1735
7SSW|1|1|U|1736
7SSW|1|1|G|1737
7SSW|1|1|G|1738
7SSW|1|1|A|1739
7SSW|1|1|G|1740

Current chains

Chain 1

23S rRNA

Nearby chains