IL_7ST2_146

3D structure

PDB id

7ST2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

7ST2|1|3|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ST2_146 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0955

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

7ST2|1|3|U|684
7ST2|1|3|G|685
7ST2|1|3|U|686
7ST2|1|3|A|687
7ST2|1|3|G|688
*
7ST2|1|3|C|699
7ST2|1|3|G|700
7ST2|1|3|U|701
7ST2|1|3|A|702
7ST2|1|3|G|703
7ST2|1|3|A|704
7ST2|1|3|G|705
7ST2|1|3|A|706

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain P

30S ribosomal protein S11