IL_7SUK_008

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

7SUK|1|8|U|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_008 not in the Motif Atlas

Geometric match to IL_4ZT0_004

Geometric discrepancy: 0.3169

The information below is about IL_4ZT0_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7SUK|1|8|C|275
7SUK|1|8|C|276
*
7SUK|1|8|G|279
7SUK|1|8|U|280
7SUK|1|8|G|281

Current chains

Chain 8

18S pre-rRNA

Nearby chains

Chain L6

40S ribosomal protein S6-A