IL_7SUK_023

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_023 not in the Motif Atlas

Homologous match to IL_9H3G_204

Geometric discrepancy: 0.5336

The information below is about IL_9H3G_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.4

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

21

Unit IDs

7SUK|1|8|C|990
7SUK|1|8|G|991
7SUK|1|8|A|992
7SUK|1|8|A|993
7SUK|1|8|G|994
*
7SUK|1|8|C|1010
7SUK|1|8|G|1011
7SUK|1|8|U|1012
7SUK|1|8|A|1013
7SUK|1|8|G|1014

Current chains

Chain 8

18S pre-rRNA

Nearby chains

Chain NJ

rRNA biogenesis protein RRP5