IL_7SUK_027

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CCUG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_027 not in the Motif Atlas

Geometric match to IL_5J7L_327

Geometric discrepancy: 0.3025

The information below is about IL_5J7L_327

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_43644.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

2

Unit IDs

7SUK|1|8|C|1173
7SUK|1|8|C|1174
7SUK|1|8|U|1175
7SUK|1|8|G|1176
*
7SUK|1|8|C|1463
7SUK|1|8|G|1464
7SUK|1|8|C|1465
7SUK|1|8|G|1466

Current chains

Chain 8

18S pre-rRNA

Nearby chains

Chain SI

Ribosome biogenesis protein BMS1

Chain SM

U3 small nucleolar ribonucleoprotein protein IMP4

Chain ST

Nucleolar complex protein 14