IL_7SUK_041

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

GGU*AGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_041 not in the Motif Atlas

Geometric match to IL_3R1C_012

Geometric discrepancy: 0.123

The information below is about IL_3R1C_012

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

7SUK|1|L0|G|97
7SUK|1|L0|G|98
7SUK|1|L0|U|99
*
7SUK|1|L0|A|145
7SUK|1|L0|G|146
7SUK|1|L0|C|147

Current chains

Chain L0

5' ETS

Nearby chains

Chain LH

NET1-associated nuclear protein 1

Chain LJ

U3 small nucleolar RNA-associated protein 15

Chain LL

U3 small nucleolar RNA-associated protein 5