IL_7SUK_056

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_056 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.1979

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

7SUK|1|L0|C|413
7SUK|1|L0|G|414
*
7SUK|1|L0|C|441
7SUK|1|L0|U|442
7SUK|1|L0|G|443

Current chains

Chain L0

5' ETS

Nearby chains

Chain SI

Ribosome biogenesis protein BMS1

Chain SQ

rRNA-processing protein FCF2

Chain SV

Regulator of rDNA transcription protein 14