IL_7SUK_077

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

AGUCG*UCU

Length

8 nucleotides

Bulged bases

7SUK|1|L0|C|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_077 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3419

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

7SUK|1|L0|A|106
7SUK|1|L0|G|107
7SUK|1|L0|U|108
7SUK|1|L0|C|109
7SUK|1|L0|G|110
*
7SUK|1|L0|U|136
7SUK|1|L0|C|137
7SUK|1|L0|U|138

Current chains

Chain L0

5' ETS

Nearby chains

Chain LJ

U3 small nucleolar RNA-associated protein 15

Chain LL

U3 small nucleolar RNA-associated protein 5

Chain SU

Nucleolar complex protein 4