IL_7SUK_083

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_083 not in the Motif Atlas

Geometric match to IL_6DTD_001

Geometric discrepancy: 0.2268

The information below is about IL_6DTD_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_59580.1

Basepair signature

cWW-cHW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7SUK|1|8|C|1653
7SUK|1|8|G|1654
7SUK|1|8|A|1655
7SUK|1|8|U|1656
*
7SUK|1|8|A|1744
7SUK|1|8|G|1745
7SUK|1|8|A|1746
7SUK|1|8|G|1747

Current chains

Chain 8

18S pre-rRNA

Nearby chains

Chain LQ

U3 small nucleolar RNA-associated protein 12