IL_7SYG_032

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

7SYG|1|2|U|627, 7SYG|1|2|A|628, 7SYG|1|2|U|630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYG_032 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2589

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7SYG|1|2|G|611
7SYG|1|2|U|612
7SYG|1|2|G|613
7SYG|1|2|C|614
7SYG|1|2|C|615
7SYG|1|2|A|616
7SYG|1|2|G|617
*
7SYG|1|2|C|624
7SYG|1|2|G|625
7SYG|1|2|G|626
7SYG|1|2|U|627
7SYG|1|2|A|628
7SYG|1|2|A|629
7SYG|1|2|U|630
7SYG|1|2|U|631
7SYG|1|2|C|632

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain Y

uS12

Chain f

eS30