IL_7SYG_051

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

7SYG|1|2|G|970

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYG_051 not in the Motif Atlas

Geometric match to IL_7A0S_004

Geometric discrepancy: 0.3883

The information below is about IL_7A0S_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_94910.1

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7SYG|1|2|G|952
7SYG|1|2|C|953
7SYG|1|2|U|954
7SYG|1|2|A|955
7SYG|1|2|G|956
*
7SYG|1|2|C|967
7SYG|1|2|U|968
7SYG|1|2|U|969
7SYG|1|2|G|970
7SYG|1|2|G|971
7SYG|1|2|A|972
7SYG|1|2|C|973
7SYG|1|2|C|974

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S3a

Chain P

uS11