IL_7SYG_084

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UUUA*UUGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYG_084 not in the Motif Atlas

Geometric match to IL_5C5W_001

Geometric discrepancy: 0.2229

The information below is about IL_5C5W_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7SYG|1|2|U|1728
7SYG|1|2|U|1729
7SYG|1|2|U|1730
7SYG|1|2|A|1731
*
7SYG|1|2|U|1803
7SYG|1|2|U|1804
7SYG|1|2|G|1805
7SYG|1|2|A|1806

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8