IL_7SYH_011

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7SYH|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYH_011 not in the Motif Atlas

Geometric match to IL_4V88_394

Geometric discrepancy: 0.2035

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7SYH|1|2|G|145
7SYH|1|2|G|146
7SYH|1|2|A|147
7SYH|1|2|U|148
7SYH|1|2|A|149
7SYH|1|2|A|150
7SYH|1|2|C|151
*
7SYH|1|2|G|167
7SYH|1|2|C|168
7SYH|1|2|U|169
7SYH|1|2|A|170
7SYH|1|2|A|171
7SYH|1|2|U|172
7SYH|1|2|A|173
7SYH|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

40S ribosomal protein S24