3D structure

PDB id
7SYH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.6 Å

Loop

Sequence
UAUCAA*UGACCACG
Length
14 nucleotides
Bulged bases
7SYH|1|2|U|361, 7SYH|1|2|C|399
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7SYH_018 not in the Motif Atlas
Geometric match to IL_5J7L_014
Geometric discrepancy: 0.1924
The information below is about IL_5J7L_014
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

7SYH|1|2|U|359
7SYH|1|2|A|360
7SYH|1|2|U|361
7SYH|1|2|C|362
7SYH|1|2|A|363
7SYH|1|2|A|364
*
7SYH|1|2|U|396
7SYH|1|2|G|397
7SYH|1|2|A|398
7SYH|1|2|C|399
7SYH|1|2|C|400
7SYH|1|2|A|401
7SYH|1|2|C|402
7SYH|1|2|G|403

Current chains

Chain 2
18S rRNA

Nearby chains

Chain J
eS8
Chain M
uS17
Chain Y
uS12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1096 s