IL_7SYH_041
3D structure
- PDB id
- 7SYH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYH_041 not in the Motif Atlas
- Geometric match to IL_4V88_425
- Geometric discrepancy: 0.3534
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7SYH|1|2|G|807
7SYH|1|2|A|808
7SYH|1|2|A|809
7SYH|1|2|A|810
7SYH|1|2|A|811
7SYH|1|2|A|812
7SYH|1|2|A|813
7SYH|1|2|U|814
7SYH|1|2|U|815
*
7SYH|1|2|A|849
7SYH|1|2|C|850
7SYH|1|2|C|851
7SYH|1|2|G|852
7SYH|1|2|C|853
7SYH|1|2|A|854
7SYH|1|2|G|855
7SYH|1|2|C|856
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- 40S ribosomal protein S4
- Chain K
- uS4
- Chain M
- uS17
- Chain X
- uS8
Coloring options: