IL_7SYH_048

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

7SYH|1|2|G|970

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYH_048 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.3103

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7SYH|1|2|G|952
7SYH|1|2|C|953
7SYH|1|2|U|954
7SYH|1|2|A|955
7SYH|1|2|G|956
*
7SYH|1|2|C|967
7SYH|1|2|U|968
7SYH|1|2|U|969
7SYH|1|2|G|970
7SYH|1|2|G|971
7SYH|1|2|A|972
7SYH|1|2|C|973
7SYH|1|2|C|974

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S3a

Chain P

uS11