IL_7SYH_050

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYH_050 not in the Motif Atlas

Geometric match to IL_6CZR_145

Geometric discrepancy: 0.2104

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7SYH|1|2|C|1047
7SYH|1|2|G|1048
7SYH|1|2|A|1049
7SYH|1|2|A|1050
7SYH|1|2|G|1051
*
7SYH|1|2|C|1067
7SYH|1|2|G|1068
7SYH|1|2|U|1069
7SYH|1|2|A|1070
7SYH|1|2|G|1071

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain b

40S ribosomal protein S26