IL_7SYH_066

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

7SYH|1|2|U|1397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYH_066 not in the Motif Atlas

Geometric match to IL_1CSL_001

Geometric discrepancy: 0.3973

The information below is about IL_1CSL_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.4

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

5

Unit IDs

7SYH|1|2|C|1395
7SYH|1|2|A|1396
7SYH|1|2|U|1397
7SYH|1|2|G|1398
7SYH|1|2|C|1399
*
7SYH|1|2|G|1447
7SYH|1|2|A|1448
7SYH|1|2|G|1449
7SYH|1|2|G|1450

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain h

RACK1